PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g040510.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 303aa    MW: 34160.2 Da    PI: 8.0135
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g040510.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000163961123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C + F++   L  H+++H
  Csa06g040510.1 39 YTCSFCRREFRSAQALGGHMNVH 61
                    9********************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.85E-63665No hitNo description
PROSITE profilePS5015711.2193966IPR007087Zinc finger, C2H2
PfamPF139122.0E-53962IPR007087Zinc finger, C2H2
SMARTSM003550.00613961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEKPDDFWIP KKSKKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFRS AQALGGHMNV  60
HRRDRARLKQ ADDQYLFSKS SSPPEYPSHN DSDDIRETSC YTLVFNSKPN YFKTQHSCVI  120
DLSSSSSLPY LTPRVSSGLP EKQNTSSSSP SFVVEPSKNS KKIPSSPWPC PSTFVEQKRC  180
DLYEIPVMEG DKKRKIESDV PRIEHKAKLG LGSSTDLSVS MNLVIHQSFP VTAHGSDDEI  240
GRGDICKRRR RHESPSQPSI FISSLSCKSD IITRKEDIKH KGDRFEDLDL ELRLGTDPPK  300
GN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-133461229superman protein
2l1o_A3e-133461229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0046840.0AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010517050.10.0PREDICTED: uncharacterized protein LOC104792567
TrEMBLO809421e-176O80942_ARATH; Putative C2H2-type zinc finger protein
STRINGAT2G37740.11e-175(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110472534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-145zinc-finger protein 10